A plant growth-promoting bacterium alters the microbial community of continuous cropping poplar trees' rhizosphere.
Identifieur interne : 000B64 ( Main/Exploration ); précédent : 000B63; suivant : 000B65A plant growth-promoting bacterium alters the microbial community of continuous cropping poplar trees' rhizosphere.
Auteurs : J. Sui [République populaire de Chine] ; C. Ji [République populaire de Chine] ; X. Wang [République populaire de Chine] ; Z. Liu [République populaire de Chine] ; R. Sa [République populaire de Chine] ; Y. Hu [République populaire de Chine] ; C. Wang [République populaire de Chine] ; Q. Li [République populaire de Chine] ; X. Liu [République populaire de Chine]Source :
- Journal of applied microbiology [ 1365-2672 ] ; 2019.
Descripteurs français
- KwdFr :
- Agriculture (MeSH), Bactéries (classification), Bactéries (génétique), Champignons (classification), Champignons (génétique), Facteur de croissance végétal (métabolisme), Facteur de croissance végétal (pharmacologie), Microbiologie du sol (MeSH), Microbiote (effets des médicaments et des substances chimiques), Paenibacillus polymyxa (métabolisme), Paenibacillus polymyxa (physiologie), Populus (croissance et développement), Populus (microbiologie), Racines de plante (microbiologie), Rhizosphère (MeSH).
- MESH :
- croissance et développement : Populus.
- effets des médicaments et des substances chimiques : Microbiote.
- génétique : Bactéries, Champignons.
- microbiologie : Populus, Racines de plante.
- métabolisme : Bactéries, Champignons, Facteur de croissance végétal, Paenibacillus polymyxa.
- pharmacologie : Facteur de croissance végétal.
- physiologie : Paenibacillus polymyxa.
- Agriculture, Microbiologie du sol, Rhizosphère.
English descriptors
- KwdEn :
- Agriculture (MeSH), Bacteria (classification), Bacteria (genetics), Fungi (classification), Fungi (genetics), Microbiota (drug effects), Paenibacillus polymyxa (metabolism), Paenibacillus polymyxa (physiology), Plant Growth Regulators (metabolism), Plant Growth Regulators (pharmacology), Plant Roots (microbiology), Populus (growth & development), Populus (microbiology), Rhizosphere (MeSH), Soil Microbiology (MeSH).
- MESH :
- chemical , metabolism : Plant Growth Regulators.
- classification : Bacteria, Fungi.
- drug effects : Microbiota.
- genetics : Bacteria, Fungi.
- growth & development : Populus.
- metabolism : Paenibacillus polymyxa.
- microbiology : Plant Roots, Populus.
- chemical , pharmacology : Plant Growth Regulators.
- physiology : Paenibacillus polymyxa.
- Agriculture, Rhizosphere, Soil Microbiology.
Abstract
AIMS
We aimed to develop a biological agent that regulates the microbial community structure of the poplar rhizosphere and alleviates the effects of continuous poplar cropping.
METHODS AND RESULTS
Poplar rhizosphere soils were treated with or without Paenibacillus polymyxa CP-S316 microbial fermentation medium. Real-time polymerase chain reaction was performed to measure bacteria and fungi in both groups, and microbial communities were analysed by metabarcoding. In fungi, the operational taxonomic units, abundance-based coverage estimator and Chao index of the CP-S316-treated group were significantly lower than those in the control check (CK) group. In bacteria, the proportions of Bacillus in the CP-S316 and CK groups were 5·20 and 2·38%, respectively, whereas those of Rhizoctonia were 2·20 and 5·82% respectively. The diameter at breast height, culturable bacteria and total bacteria of poplars treated with CP-S316 exceeded those in the CK group.
CONCLUSIONS
Our data confirmed that CP-S316 could improve the microbial community structure of poplar rhizosphere and promote the growth of poplars.
SIGNIFICANCE AND IMPACT OF THE STUDY
Research aimed at alleviating continuous cropping obstacles and promoting poplar growth via biocontrol agents is uncommon. We analysed the community structures of bacteria and fungi in rhizosphere soil to illustrate the use of CP-S316 for poplar cropping for improving plant health in the continuous cropping of poplar trees.
DOI: 10.1111/jam.14194
PubMed: 30614155
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Sui</name><affiliation wicri:level="1"><nlm:affiliation>College of Life Sciences, Shandong Agricultural University, Taian, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Life Sciences, Shandong Agricultural University, Taian</wicri:regionArea><wicri:noRegion>Taian</wicri:noRegion></affiliation></author><author><name sortKey="Ji, C" sort="Ji, C" uniqKey="Ji C" first="C" last="Ji">C. Ji</name><affiliation wicri:level="1"><nlm:affiliation>College of Forestry, Shandong Agricultural University, Taian, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Forestry, Shandong Agricultural University, Taian</wicri:regionArea><wicri:noRegion>Taian</wicri:noRegion></affiliation></author><author><name sortKey="Wang, X" sort="Wang, X" uniqKey="Wang X" first="X" last="Wang">X. 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Sa</name><affiliation wicri:level="1"><nlm:affiliation>School of Life Sciences, Taishan Medical University, Taian, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Life Sciences, Taishan Medical University, Taian</wicri:regionArea><wicri:noRegion>Taian</wicri:noRegion></affiliation></author><author><name sortKey="Hu, Y" sort="Hu, Y" uniqKey="Hu Y" first="Y" last="Hu">Y. Hu</name><affiliation wicri:level="1"><nlm:affiliation>College of Forestry, Shandong Agricultural University, Taian, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Forestry, Shandong Agricultural University, Taian</wicri:regionArea><wicri:noRegion>Taian</wicri:noRegion></affiliation></author><author><name sortKey="Wang, C" sort="Wang, C" uniqKey="Wang C" first="C" last="Wang">C. 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Liu</name><affiliation wicri:level="1"><nlm:affiliation>College of Forestry, Shandong Agricultural University, Taian, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Forestry, Shandong Agricultural University, Taian</wicri:regionArea><wicri:noRegion>Taian</wicri:noRegion></affiliation></author></analytic><series><title level="j">Journal of applied microbiology</title><idno type="eISSN">1365-2672</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Agriculture (MeSH)</term><term>Bacteria (classification)</term><term>Bacteria (genetics)</term><term>Fungi (classification)</term><term>Fungi (genetics)</term><term>Microbiota (drug effects)</term><term>Paenibacillus polymyxa (metabolism)</term><term>Paenibacillus polymyxa (physiology)</term><term>Plant Growth Regulators (metabolism)</term><term>Plant Growth Regulators (pharmacology)</term><term>Plant Roots (microbiology)</term><term>Populus (growth & development)</term><term>Populus (microbiology)</term><term>Rhizosphere (MeSH)</term><term>Soil Microbiology (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Agriculture (MeSH)</term><term>Bactéries (classification)</term><term>Bactéries (génétique)</term><term>Champignons (classification)</term><term>Champignons (génétique)</term><term>Facteur de croissance végétal (métabolisme)</term><term>Facteur de croissance végétal (pharmacologie)</term><term>Microbiologie du sol (MeSH)</term><term>Microbiote (effets des médicaments et des substances chimiques)</term><term>Paenibacillus polymyxa (métabolisme)</term><term>Paenibacillus polymyxa (physiologie)</term><term>Populus (croissance et développement)</term><term>Populus (microbiologie)</term><term>Racines de plante (microbiologie)</term><term>Rhizosphère (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Plant Growth Regulators</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Bacteria</term><term>Fungi</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Microbiota</term></keywords><keywords scheme="MESH" qualifier="effets des médicaments et des substances chimiques" xml:lang="fr"><term>Microbiote</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Bacteria</term><term>Fungi</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Bactéries</term><term>Champignons</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Paenibacillus polymyxa</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Populus</term><term>Racines de plante</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Roots</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Bactéries</term><term>Champignons</term><term>Facteur de croissance végétal</term><term>Paenibacillus polymyxa</term></keywords><keywords scheme="MESH" qualifier="pharmacologie" xml:lang="fr"><term>Facteur de croissance végétal</term></keywords><keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Plant Growth Regulators</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Paenibacillus polymyxa</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Paenibacillus polymyxa</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Agriculture</term><term>Rhizosphere</term><term>Soil Microbiology</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Agriculture</term><term>Microbiologie du sol</term><term>Rhizosphère</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>AIMS</b></p><p>We aimed to develop a biological agent that regulates the microbial community structure of the poplar rhizosphere and alleviates the effects of continuous poplar cropping.</p></div><div type="abstract" xml:lang="en"><p><b>METHODS AND RESULTS</b></p><p>Poplar rhizosphere soils were treated with or without Paenibacillus polymyxa CP-S316 microbial fermentation medium. Real-time polymerase chain reaction was performed to measure bacteria and fungi in both groups, and microbial communities were analysed by metabarcoding. In fungi, the operational taxonomic units, abundance-based coverage estimator and Chao index of the CP-S316-treated group were significantly lower than those in the control check (CK) group. In bacteria, the proportions of Bacillus in the CP-S316 and CK groups were 5·20 and 2·38%, respectively, whereas those of Rhizoctonia were 2·20 and 5·82% respectively. The diameter at breast height, culturable bacteria and total bacteria of poplars treated with CP-S316 exceeded those in the CK group.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b></p><p>Our data confirmed that CP-S316 could improve the microbial community structure of poplar rhizosphere and promote the growth of poplars.</p></div><div type="abstract" xml:lang="en"><p><b>SIGNIFICANCE AND IMPACT OF THE STUDY</b></p><p>Research aimed at alleviating continuous cropping obstacles and promoting poplar growth via biocontrol agents is uncommon. We analysed the community structures of bacteria and fungi in rhizosphere soil to illustrate the use of CP-S316 for poplar cropping for improving plant health in the continuous cropping of poplar trees.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">30614155</PMID><DateCompleted><Year>2019</Year><Month>04</Month><Day>24</Day></DateCompleted><DateRevised><Year>2019</Year><Month>04</Month><Day>24</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1365-2672</ISSN><JournalIssue CitedMedium="Internet"><Volume>126</Volume><Issue>4</Issue><PubDate><Year>2019</Year><Month>Apr</Month></PubDate></JournalIssue><Title>Journal of applied microbiology</Title><ISOAbbreviation>J Appl Microbiol</ISOAbbreviation></Journal><ArticleTitle>A plant growth-promoting bacterium alters the microbial community of continuous cropping poplar trees' rhizosphere.</ArticleTitle><Pagination><MedlinePgn>1209-1220</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/jam.14194</ELocationID><Abstract><AbstractText Label="AIMS" NlmCategory="OBJECTIVE">We aimed to develop a biological agent that regulates the microbial community structure of the poplar rhizosphere and alleviates the effects of continuous poplar cropping.</AbstractText><AbstractText Label="METHODS AND RESULTS" NlmCategory="RESULTS">Poplar rhizosphere soils were treated with or without Paenibacillus polymyxa CP-S316 microbial fermentation medium. Real-time polymerase chain reaction was performed to measure bacteria and fungi in both groups, and microbial communities were analysed by metabarcoding. In fungi, the operational taxonomic units, abundance-based coverage estimator and Chao index of the CP-S316-treated group were significantly lower than those in the control check (CK) group. In bacteria, the proportions of Bacillus in the CP-S316 and CK groups were 5·20 and 2·38%, respectively, whereas those of Rhizoctonia were 2·20 and 5·82% respectively. The diameter at breast height, culturable bacteria and total bacteria of poplars treated with CP-S316 exceeded those in the CK group.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">Our data confirmed that CP-S316 could improve the microbial community structure of poplar rhizosphere and promote the growth of poplars.</AbstractText><AbstractText Label="SIGNIFICANCE AND IMPACT OF THE STUDY" NlmCategory="CONCLUSIONS">Research aimed at alleviating continuous cropping obstacles and promoting poplar growth via biocontrol agents is uncommon. We analysed the community structures of bacteria and fungi in rhizosphere soil to illustrate the use of CP-S316 for poplar cropping for improving plant health in the continuous cropping of poplar trees.</AbstractText><CopyrightInformation>© 2019 The Society for Applied Microbiology.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Sui</LastName><ForeName>J</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Shandong Agricultural University, Taian, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ji</LastName><ForeName>C</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>College of Forestry, Shandong Agricultural University, Taian, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>X</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Shandong Agricultural University, Taian, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Z</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>College of Forestry, Shandong Agricultural University, Taian, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sa</LastName><ForeName>R</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>School of Life Sciences, Taishan Medical University, Taian, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hu</LastName><ForeName>Y</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>College of Forestry, Shandong Agricultural University, Taian, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>C</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>College of Forestry, Shandong Agricultural University, Taian, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Q</ForeName><Initials>Q</Initials><AffiliationInfo><Affiliation>College of Forestry, Shandong Agricultural University, Taian, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>X</ForeName><Initials>X</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-5630-8763</Identifier><AffiliationInfo><Affiliation>College of Forestry, Shandong Agricultural University, Taian, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>SRR5901141</AccessionNumber></AccessionNumberList></DataBank></DataBankList><GrantList CompleteYN="Y"><Grant><GrantID>201503112</GrantID><Agency>Special Fund for Agro-scientific Research in the Public Interest</Agency><Country></Country></Grant><Grant><Agency>Funds of Shandong 'Double Tops'</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>02</Month><Day>18</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>J Appl Microbiol</MedlineTA><NlmUniqueID>9706280</NlmUniqueID><ISSNLinking>1364-5072</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010937">Plant Growth Regulators</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000383" MajorTopicYN="Y">Agriculture</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001419" MajorTopicYN="N">Bacteria</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005658" MajorTopicYN="N">Fungi</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D064307" MajorTopicYN="N">Microbiota</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="Y">drug effects</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000070057" MajorTopicYN="N">Paenibacillus polymyxa</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010937" MajorTopicYN="N">Plant Growth Regulators</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName><QualifierName UI="Q000494" MajorTopicYN="Y">pharmacology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D058441" MajorTopicYN="N">Rhizosphere</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Paenibacillus polymyxa
</Keyword><Keyword MajorTopicYN="N">continuous cropping</Keyword><Keyword MajorTopicYN="N">microbial community structure</Keyword><Keyword MajorTopicYN="N">poplar</Keyword><Keyword MajorTopicYN="N">rhizosphere</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>11</Month><Day>04</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2019</Year><Month>01</Month><Day>02</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>01</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>1</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>4</Month><Day>25</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>1</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30614155</ArticleId><ArticleId IdType="doi">10.1111/jam.14194</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Sui, J" sort="Sui, J" uniqKey="Sui J" first="J" last="Sui">J. Sui</name></noRegion><name sortKey="Hu, Y" sort="Hu, Y" uniqKey="Hu Y" first="Y" last="Hu">Y. Hu</name><name sortKey="Ji, C" sort="Ji, C" uniqKey="Ji C" first="C" last="Ji">C. Ji</name><name sortKey="Li, Q" sort="Li, Q" uniqKey="Li Q" first="Q" last="Li">Q. Li</name><name sortKey="Liu, X" sort="Liu, X" uniqKey="Liu X" first="X" last="Liu">X. Liu</name><name sortKey="Liu, Z" sort="Liu, Z" uniqKey="Liu Z" first="Z" last="Liu">Z. Liu</name><name sortKey="Sa, R" sort="Sa, R" uniqKey="Sa R" first="R" last="Sa">R. Sa</name><name sortKey="Wang, C" sort="Wang, C" uniqKey="Wang C" first="C" last="Wang">C. Wang</name><name sortKey="Wang, X" sort="Wang, X" uniqKey="Wang X" first="X" last="Wang">X. Wang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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